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Crystal Structure of a dimeric variant of Bet v 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A88 PDB ENTRY 4A88
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 27 % PEG 3350, 0.1 M NA-ACETAT TRIHYDRATE PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.01 38.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.07 α = 90 b = 61.22 β = 107.73 c = 60.09 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 57.33 99.5 0.06 13.2 3.4 34452
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.72 99 0.62 1.9 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A88 1.63 57.33 32699 1735 99.43 0.184 0.181 0.2035 0.238 0.2493 RANDOM 17.656
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.49 0.45 0.75 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.336 r_dihedral_angle_4_deg 26.85 r_sphericity_free 20.713 r_dihedral_angle_3_deg 12.717 r_mcangle_it 5.959 r_dihedral_angle_1_deg 5.162 r_sphericity_bonded 4.651 r_mcbond_it 4.314 r_scbond_it 3.759 r_rigid_bond_restr 3.759
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.336 r_dihedral_angle_4_deg 26.85 r_sphericity_free 20.713 r_dihedral_angle_3_deg 12.717 r_mcangle_it 5.959 r_dihedral_angle_1_deg 5.162 r_sphericity_bonded 4.651 r_mcbond_it 4.314 r_scbond_it 3.759 r_rigid_bond_restr 3.759 r_mcbond_other 1.736 r_angle_refined_deg 0.93 r_angle_other_deg 0.718 r_symmetry_vdw_refined 0.203 r_nbd_refined 0.192 r_nbd_other 0.18 r_nbtor_refined 0.171 r_symmetry_hbond_refined 0.166 r_symmetry_vdw_other 0.165 r_xyhbond_nbd_refined 0.109 r_nbtor_other 0.08 r_chiral_restr 0.057 r_bond_refined_d 0.004 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2451 Nucleic Acid Atoms Solvent Atoms 428 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing