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Crystal structure of truncated human CRMP-5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GSE PDB ENTRY 2GSE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 23% (V/V) PEG 400 MMT PH 5.0
Crystal Properties Matthews coefficient Solvent content 2.28 46.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.09 α = 90 b = 90.09 β = 90 c = 248.34 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 51.1 97.8 0.09 12.9 7 110493 3 22.608
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 87.1 0.6 2.3 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2GSE 1.7 39.6 104852 5532 97.63 0.17168 0.17008 0.1791 0.20181 0.2082 RANDOM 24.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 -0.92 1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.552 r_dihedral_angle_4_deg 14.853 r_dihedral_angle_3_deg 13.143 r_dihedral_angle_1_deg 6.279 r_angle_refined_deg 1.923 r_angle_other_deg 1.3 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.552 r_dihedral_angle_4_deg 14.853 r_dihedral_angle_3_deg 13.143 r_dihedral_angle_1_deg 6.279 r_angle_refined_deg 1.923 r_angle_other_deg 1.3 r_chiral_restr 0.12 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7286 Nucleic Acid Atoms Solvent Atoms 582 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing