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Crystal structure of hypothetical protein PA1648 from Pseudomonas aeruginosa.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4B7C PDB ENTRY 4B7C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.9 M NA CITRATE, 0.1 M MES PH 6.5, 0.1 M MGSO4, 10 % GLYCEROL
Crystal Properties Matthews coefficient Solvent content 3.13 60.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 169.26 α = 90 b = 175.97 β = 90 c = 182.17 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 56.42 99.9 0.1 13 7.9 273854 2 33.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.68 3 8.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4B7C 2.2 56.42 273580 13809 99.767 0.239 0.237 0.2339 0.2759 0.2716 RANDOM 45.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.781 -1.393 2.175
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.577 r_dihedral_angle_4_deg 18.258 r_dihedral_angle_3_deg 15.243 r_scbond_it 6.275 r_scangle_it 5.985 r_dihedral_angle_1_deg 5.632 r_mcangle_it 3.587 r_mcbond_it 2.259 r_angle_refined_deg 1.245 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.577 r_dihedral_angle_4_deg 18.258 r_dihedral_angle_3_deg 15.243 r_scbond_it 6.275 r_scangle_it 5.985 r_dihedral_angle_1_deg 5.632 r_mcangle_it 3.587 r_mcbond_it 2.259 r_angle_refined_deg 1.245 r_nbtor_refined 0.309 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 28978 Nucleic Acid Atoms Solvent Atoms 654 Heterogen Atoms 576
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing