☰ Navigation Tabs
PikC bound to the 10-DML analog with the 3-(N,N-dimethylamino) propanoate anchoring group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BVJ PDB ENTRY 2BVJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 296 20% PEG 3350, 0.05 M AMMONIUM SULFATE, 0.1 M TRIS HCL, PH 6.5, 23 DEGREES C
Crystal Properties Matthews coefficient Solvent content 2.17 43.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.766 α = 79.96 b = 58.042 β = 79.52 c = 96.415 γ = 88.73
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 315r MIRRORS 2012-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 93.37 94.2 0.04 7.8 1.8 59193 1.4 25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.98 87.8 0.83 1.4 1.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BVJ 1.89 93.37 55068 2967 93.92 0.20273 0.19971 0.1993 0.25747 0.2534 RANDOM 31.07
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3 -0.91 -0.17 -1.33 0.88 -1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.633 r_dihedral_angle_4_deg 20.988 r_dihedral_angle_3_deg 16.863 r_dihedral_angle_1_deg 6.184 r_scangle_it 4.823 r_scbond_it 3.305 r_angle_refined_deg 2.046 r_mcangle_it 1.907 r_mcbond_it 1.15 r_chiral_restr 0.137
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.633 r_dihedral_angle_4_deg 20.988 r_dihedral_angle_3_deg 16.863 r_dihedral_angle_1_deg 6.184 r_scangle_it 4.823 r_scbond_it 3.305 r_angle_refined_deg 2.046 r_mcangle_it 1.907 r_mcbond_it 1.15 r_chiral_restr 0.137 r_bond_refined_d 0.023 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6083 Nucleic Acid Atoms Solvent Atoms 446 Heterogen Atoms 160
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing