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Crystal Structure of the lectin domain of F18 fimbrial adhesin FedF.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 0.17 M AMMONIUM SULFATE, 25.5% (W/V) PEG 4000 AND 15% (V/V) GLYCEROL
Crystal Properties Matthews coefficient Solvent content 2.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.181 α = 90 b = 74.382 β = 90 c = 98.857 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X12 EMBL/DESY, HAMBURG X12
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.81 100 0.07 28.83 2 24427 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 100 0.185 12.94
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.8 19.81 24427 1051 99.99 0.17947 0.17774 0.22078 0.2091 RANDOM 23.696
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 0.04 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.809 r_dihedral_angle_3_deg 12.946 r_scangle_it 7.124 r_dihedral_angle_1_deg 6.995 r_dihedral_angle_4_deg 5.389 r_scbond_it 4.842 r_mcangle_it 2.195 r_angle_refined_deg 1.69 r_mcbond_it 1.25 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.809 r_dihedral_angle_3_deg 12.946 r_scangle_it 7.124 r_dihedral_angle_1_deg 6.995 r_dihedral_angle_4_deg 5.389 r_scbond_it 4.842 r_mcangle_it 2.195 r_angle_refined_deg 1.69 r_mcbond_it 1.25 r_nbtor_refined 0.31 r_nbd_refined 0.211 r_symmetry_hbond_refined 0.202 r_symmetry_vdw_refined 0.187 r_xyhbond_nbd_refined 0.161 r_chiral_restr 0.135 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2168 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 23
Software Software Software Name Purpose SIGMAA model building MLPHARE model building XSCALE data scaling SHELXCD phasing PHASER phasing SIGMAA phasing RESOLVE phasing BP3 phasing ABS phasing MLPHARE phasing REFMAC refinement SHELXE phasing