☰ Navigation Tabs
Pseudomonas aeruginosa RmlA in complex with allosteric inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ARW PDB ENTRY 4ARW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 4% PEG 6000, 0.1 M MES PH 6, 0.05 M MGCL2, 0.1 M NA BR, 1% BETA-MERCAPTOETHANOL
Crystal Properties Matthews coefficient Solvent content 2.56 51.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.06 α = 90 b = 154.24 β = 92.78 c = 134.85 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 59.1 95.8 0.08 13.7 7.5 72939 2 42.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.15 99.9 0.53 3.5 7.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ARW 2.1 59.101 72228 3645 94.882 0.228 0.2262 0.2301 0.2655 0.2675 RANDOM 55.553
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.254 -0.065 0.556 -2.817
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.223 r_dihedral_angle_4_deg 19.218 r_dihedral_angle_3_deg 15.79 r_scbond_it 9.617 r_scangle_it 8.336 r_mcangle_it 6.284 r_dihedral_angle_1_deg 5.993 r_mcbond_it 4.446 r_angle_refined_deg 1.442 r_mcbond_other 1.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.223 r_dihedral_angle_4_deg 19.218 r_dihedral_angle_3_deg 15.79 r_scbond_it 9.617 r_scangle_it 8.336 r_mcangle_it 6.284 r_dihedral_angle_1_deg 5.993 r_mcbond_it 4.446 r_angle_refined_deg 1.442 r_mcbond_other 1.345 r_angle_other_deg 1.325 r_nbd_refined 0.216 r_nbtor_refined 0.178 r_nbd_other 0.163 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.082 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.006 r_gen_planes_other 0.005 r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9205 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 108
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing