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COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CCC PDB ENTRY 2CCC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 M HEPES (PH 7.5), PEG 400 30% (V/V), 2.5 M NACL, 0.2 M MGCL2
Crystal Properties Matthews coefficient Solvent content 3.64 66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.574 α = 90 b = 142.574 β = 90 c = 142.574 γ = 90
Symmetry Space Group F 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 99.8 0.12 18.9 13.8 8867 4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.66 4.2 14.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2CCC 2 20 8391 467 99.8 0.16574 0.16464 0.164 0.18502 0.1862 RANDOM 27.392
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.431 r_dihedral_angle_3_deg 12.712 r_dihedral_angle_4_deg 7.177 r_dihedral_angle_1_deg 6.883 r_angle_refined_deg 2.836 r_chiral_restr 0.242 r_bond_refined_d 0.032 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.431 r_dihedral_angle_3_deg 12.712 r_dihedral_angle_4_deg 7.177 r_dihedral_angle_1_deg 6.883 r_angle_refined_deg 2.836 r_chiral_restr 0.242 r_bond_refined_d 0.032 r_gen_planes_refined 0.015 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 495 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing