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CARBOHYDRATE BINDING MODULE CBM66 FROM BACILLUS SUBTILIS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AZZ PDB ENTRY 4AZZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 25% (W/V) PEG 1500, 100MM MMT BUFFER, 5-6 MM LEVAN BIOSE.
Crystal Properties Matthews coefficient Solvent content 1.7 27.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.616 α = 90 b = 38.616 β = 90 c = 162.391 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU R-AXIS IV MIRRORS 2011-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 40.6 98.7 0.07 18.7 8.9 17659 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 91.3 0.49 3.1 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4AZZ 1.65 54.13 16699 899 98.58 0.17998 0.1761 0.1746 0.25591 0.2545 RANDOM 17.258
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.03 -0.07 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.614 r_dihedral_angle_4_deg 21.754 r_sphericity_free 15.496 r_dihedral_angle_3_deg 13.806 r_sphericity_bonded 12.626 r_dihedral_angle_1_deg 8.026 r_rigid_bond_restr 3.432 r_angle_refined_deg 1.456 r_chiral_restr 0.104 r_bond_refined_d 0.012
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.614 r_dihedral_angle_4_deg 21.754 r_sphericity_free 15.496 r_dihedral_angle_3_deg 13.806 r_sphericity_bonded 12.626 r_dihedral_angle_1_deg 8.026 r_rigid_bond_restr 3.432 r_angle_refined_deg 1.456 r_chiral_restr 0.104 r_bond_refined_d 0.012 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1260 Nucleic Acid Atoms Solvent Atoms 56 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing