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Structure of unliganded human PARG catalytic domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 28% PEG3350, 0.2M MAGNESIUM CHLORIDE, 0.1M PCTP (0.04M SODIUM PROPIONATE, 0.02M SODIUM CACODYLATE, 0.04M BIS-TRIS PROPANE) PH 7.5; 1:1 RATIO; 4 MICROLITRE DROP; ROOM TEMPERATURE
Crystal Properties Matthews coefficient Solvent content 2.36 47.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.759 α = 90 b = 66.387 β = 95.26 c = 89.323 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 2009-11-19 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979, 0.975, 0.982 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 88.99 86.3 0.11 12.4 6.3 39497 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.83 1.93 47.9 0.38 2 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.83 66.43 36906 1985 84.76 0.18492 0.18313 0.1947 0.21794 0.2273 RANDOM 26.243
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.52 0.62 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.596 r_dihedral_angle_4_deg 17.328 r_dihedral_angle_3_deg 15.464 r_dihedral_angle_1_deg 5.986 r_scangle_it 3.528 r_scbond_it 2.42 r_angle_other_deg 1.699 r_mcangle_it 1.487 r_angle_refined_deg 1.444 r_mcbond_it 0.826
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.596 r_dihedral_angle_4_deg 17.328 r_dihedral_angle_3_deg 15.464 r_dihedral_angle_1_deg 5.986 r_scangle_it 3.528 r_scbond_it 2.42 r_angle_other_deg 1.699 r_mcangle_it 1.487 r_angle_refined_deg 1.444 r_mcbond_it 0.826 r_mcbond_other 0.211 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3985 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHELX phasing