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The X-ray structure of zinc bound ZinT
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OEK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 AMMONIUM SULPHATE 1.5 M, SODIUM ACETATE 0.1 M PH 4.6
Crystal Properties Matthews coefficient Solvent content 3.09 59.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.398 α = 90 b = 58.398 β = 90 c = 291.461 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 99 98 0.18 15.02 5.8 10654
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.59 100 0.47 3.83 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 10EK 2.52 50.57 10068 509 96.91 0.23789 0.23375 0.2266 0.32208 0.3049 RANDOM 26.433
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.06 -0.12 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.777 r_dihedral_angle_4_deg 17.199 r_dihedral_angle_3_deg 17.046 r_dihedral_angle_1_deg 5.689 r_scangle_it 4.397 r_scbond_it 2.707 r_mcangle_it 1.749 r_angle_refined_deg 1.611 r_mcbond_it 0.908 r_chiral_restr 0.106
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.777 r_dihedral_angle_4_deg 17.199 r_dihedral_angle_3_deg 17.046 r_dihedral_angle_1_deg 5.689 r_scangle_it 4.397 r_scbond_it 2.707 r_mcangle_it 1.749 r_angle_refined_deg 1.611 r_mcbond_it 0.908 r_chiral_restr 0.106 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1508 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing