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Structure of CPHPC bound to Serum Amyloid P Component
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SAC PDB ENTRY 1SAC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.67 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.379 α = 90 b = 108.579 β = 138.53 c = 120.263 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 1.69 99.2 0.07 12.4 3.7 170912 2 14.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 98.4 0.21 3.5 3.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1SAC 1.6 37.869 1.35 170875 2004 99.06 0.1503 0.15 0.1569 0.175 0.1795 18.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.004 1.5727 2.5107 -2.5067
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 20.134 f_angle_d 1.548 f_chiral_restr 0.121 f_bond_d 0.01 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8245 Nucleic Acid Atoms Solvent Atoms 1401 Heterogen Atoms 428
Software Software Software Name Purpose PHENIX refinement MOLREP phasing