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Crystal structure of the DNA-binding domain of human ETV1.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GVJ PDB ENTRY 1GVJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 2.5M SODIUM FORMATE, pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.72 28.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.317 α = 77.89 b = 45.607 β = 84.8 c = 55.406 γ = 90.02
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MARMOSAIC 300 MIRRORS 2012-04-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.82 53.94 97.4 0.054 0.062 10.4 2.3 27819 2 22.04
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.82 1.92 96.2 0.33 0.36 2.3 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GVJ 1.82 53.94 27704 1401 97.36 0.2227 0.2207 0.2331 0.2576 0.277 RANDOM 23.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.085 0.4741 -1.6649 2.7315 0.4987 2.3535
RMS Deviations Key Refinement Restraint Deviation t_omega_torsion 3.35 t_other_torsion 2.67 t_angle_deg 0.93 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_omega_torsion 3.35 t_other_torsion 2.67 t_angle_deg 0.93 t_bond_d 0.01 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3004 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 8
Software Software Software Name Purpose BUSTER refinement autoPROC data reduction AP_SCALE data scaling PHASER phasing