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Crystal structure of ANCE in complex with Thr6-Bradykinin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X8Y PDB ENTRY 2X8Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100 MM HEPES 1.3 M SODIUM CITRATE, pH 7.5
Crystal Properties Matthews coefficient Solvent content 4.2 71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.292 α = 90 b = 173.292 β = 90 c = 101.458 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 96 0.04 14.9 2.3 89784
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 82.3 0.16 5.1 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2X8Y 1.9 86.65 82488 4348 96.25 0.18359 0.18274 0.1831 0.19996 0.2012 RANDOM 26.698
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.93 -0.96 -1.93 2.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.293 r_dihedral_angle_4_deg 16.647 r_dihedral_angle_3_deg 11.898 r_dihedral_angle_1_deg 4.532 r_scangle_it 1.421 r_angle_refined_deg 0.909 r_scbond_it 0.809 r_mcangle_it 0.478 r_mcbond_it 0.232 r_chiral_restr 0.069
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.293 r_dihedral_angle_4_deg 16.647 r_dihedral_angle_3_deg 11.898 r_dihedral_angle_1_deg 4.532 r_scangle_it 1.421 r_angle_refined_deg 0.909 r_scbond_it 0.809 r_mcangle_it 0.478 r_mcbond_it 0.232 r_chiral_restr 0.069 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4903 Nucleic Acid Atoms Solvent Atoms 573 Heterogen Atoms 114
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction TRUNCATE data scaling PHASER phasing