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Crystal structure of the NS6 protease from murine norovirus 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WQS PDB ENTRIES 1WQS, 2FYQ, AND 2IPH experimental model PDB 2FYQ PDB ENTRIES 1WQS, 2FYQ, AND 2IPH experimental model PDB 2IPH PDB ENTRIES 1WQS, 2FYQ, AND 2IPH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.2 M KSCN,0.1 M BIS-TRIS PROPANE PH 7.5, 20% W/V POLY-ETHYLENE GLYCOL (PEG) 3350
Crystal Properties Matthews coefficient Solvent content 2.2 44.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.92 α = 90 b = 70.14 β = 90 c = 192.13 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M MIRRORS 2011-05-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 48.03 94.2 0.04 29.8 12.4 44988 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.58 1.62 65.3 0.55 3.2 8.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 1WQS, 2FYQ, AND 2IPH 1.578 48.032 1.4 44931 2266 93.94 0.1849 0.1836 0.2084 0.2202
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.1405 14.401 -9.2605
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.609 f_angle_d 0.98 f_chiral_restr 0.066 f_bond_d 0.006 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2585 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing