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Yersinia kristensenii phytase apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ARS PDB ENTRY 4ARS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 PROTEIN CONCENTRATION 10MG/ML; CONDITION A12 FROM PACT SCREEN: SUCCINATE PHOSPHATE BORATE PH 5.0, 25% PEG1500
Crystal Properties Matthews coefficient Solvent content 2.87 54.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.41 α = 76.67 b = 67.723 β = 87.35 c = 73.164 γ = 78.32
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MAR scanner 345 mm plate M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.66 1.75 90.8 0.05 24.9 5.6 118484 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.66 1.75 79.1 0.18 4.9 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ARS 1.67 27.92 103327 5512 91.78 0.16538 0.16363 0.1722 0.19847 0.2072 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 0.25 -0.21 -0.01 0.44 0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.783 r_dihedral_angle_4_deg 16.824 r_dihedral_angle_3_deg 12.793 r_dihedral_angle_1_deg 5.815 r_angle_refined_deg 1.805 r_angle_other_deg 0.875 r_chiral_restr 0.109 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.783 r_dihedral_angle_4_deg 16.824 r_dihedral_angle_3_deg 12.793 r_dihedral_angle_1_deg 5.815 r_angle_refined_deg 1.805 r_angle_other_deg 0.875 r_chiral_restr 0.109 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6360 Nucleic Acid Atoms Solvent Atoms 1160 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement MOLREP phasing