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X-ray crystallographic structure of Crimean-congo haemorrhagic fever virus nucleoprotein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1M MES, PH 6.5, 37% (V/V) PEG 200, 12% (V/V) PEG 400
Crystal Properties Matthews coefficient Solvent content 4.55 72.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.119 α = 90 b = 133.119 β = 90 c = 289.141 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL13B1 NSRRC BL13B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 30 99.9 0.08 20.6 5.5 54514 -1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.21 100 0.88 1.4 5.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 3.1 29.24 51772 2769 99.73 0.17332 0.17013 0.1691 0.23328 0.2315 RANDOM 96.484
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 0.09 0.18 -0.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.675 r_sphericity_bonded 31.077 r_sphericity_free 27.513 r_dihedral_angle_3_deg 23.998 r_dihedral_angle_4_deg 22.544 r_rigid_bond_restr 7.725 r_dihedral_angle_1_deg 5.385 r_angle_refined_deg 1.393 r_chiral_restr 0.089 r_bond_refined_d 0.011
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.675 r_sphericity_bonded 31.077 r_sphericity_free 27.513 r_dihedral_angle_3_deg 23.998 r_dihedral_angle_4_deg 22.544 r_rigid_bond_restr 7.725 r_dihedral_angle_1_deg 5.385 r_angle_refined_deg 1.393 r_chiral_restr 0.089 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11088 Nucleic Acid Atoms Solvent Atoms 289 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELX phasing