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Structural Determinants of the beta-Selectivity of a Bacterial Aminotransferase
Crystallization Crystal Properties Matthews coefficient Solvent content 2.77 55.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 184.387 α = 90 b = 94.864 β = 113.77 c = 102.973 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH SX-165 2009-10-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 48.38 98.7 0.07 7.6 3 116568 17.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.06 99.6 0.24 3.3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.95 47.43 110560 5790 98.43 0.18498 0.18333 0.1903 0.21631 0.2215 RANDOM 19.707
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.68 0.4 -0.17 1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.908 r_dihedral_angle_4_deg 16.699 r_dihedral_angle_3_deg 13.383 r_dihedral_angle_1_deg 6.066 r_scangle_it 4.109 r_scbond_it 2.55 r_mcangle_it 1.381 r_mcbond_it 0.776 r_chiral_restr 0.104 r_bond_refined_d 0.018
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.908 r_dihedral_angle_4_deg 16.699 r_dihedral_angle_3_deg 13.383 r_dihedral_angle_1_deg 6.066 r_scangle_it 4.109 r_scbond_it 2.55 r_mcangle_it 1.381 r_mcbond_it 0.776 r_chiral_restr 0.104 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_refined_deg r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9685 Nucleic Acid Atoms Solvent Atoms 626 Heterogen Atoms 107
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling