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Crystal structure of S. aureus FabI (P32)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ALL PDB ENTRY 4ALL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.61 M NH4H2PO4, 9% T-BUTANOL, 0.01 M EDTA PH 7.0
Crystal Properties Matthews coefficient Solvent content 2.99 58.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.78 α = 90 b = 123.78 β = 90 c = 190.11 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2010-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.05 50 99.3 0.12 6.76 2.6 61623 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.05 3.2 99.7 0.5 2.12 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ALL 3.05 44.28 58556 3064 99.06 0.20509 0.20292 0.2022 0.24554 0.2454 RANDOM 67.113
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 18.01 18.01 -36.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.466 r_dihedral_angle_4_deg 21.015 r_dihedral_angle_3_deg 18.079 r_scangle_it 6.595 r_dihedral_angle_1_deg 5.908 r_scbond_it 3.767 r_mcangle_it 2.575 r_angle_refined_deg 1.482 r_mcbond_it 1.39 r_chiral_restr 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.466 r_dihedral_angle_4_deg 21.015 r_dihedral_angle_3_deg 18.079 r_scangle_it 6.595 r_dihedral_angle_1_deg 5.908 r_scbond_it 3.767 r_mcangle_it 2.575 r_angle_refined_deg 1.482 r_mcbond_it 1.39 r_chiral_restr 0.09 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 19811 Nucleic Acid Atoms Solvent Atoms 250 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing