4ALL

Crystal structure of S. aureus FabI in complex with NADP and triclosan (P212121)


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2QIOPDB ENTRY 2QIO

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
16.50.1 M K/NA-PHOSPHATE PH 6.5, 35% MPD
Crystal Properties
Matthews coefficientSolvent content
2.346.11

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.52α = 90
b = 111.91β = 90
c = 111.64γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2009-08-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONBESSY BEAMLINE 14.1BESSY14.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.842.9187.20.156.495.25228276
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.82.9589.60.362.515.16

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2QIO2.879.0421537114685.890.216450.214060.2624RANDOM66.354
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.34-2.332.67
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.299
r_dihedral_angle_3_deg18.412
r_dihedral_angle_4_deg16.409
r_dihedral_angle_1_deg5.908
r_scangle_it2.244
r_angle_refined_deg1.591
r_scbond_it1.244
r_mcangle_it0.696
r_mcbond_it0.359
r_chiral_restr0.119
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.299
r_dihedral_angle_3_deg18.412
r_dihedral_angle_4_deg16.409
r_dihedral_angle_1_deg5.908
r_scangle_it2.244
r_angle_refined_deg1.591
r_scbond_it1.244
r_mcangle_it0.696
r_mcbond_it0.359
r_chiral_restr0.119
r_bond_refined_d0.013
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7832
Nucleic Acid Atoms
Solvent Atoms9
Heterogen Atoms260

Software

Software
Software NamePurpose
REFMACrefinement
iMOSFLMdata reduction
SCALAdata scaling
PHASERphasing