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Crystal structure of S. aureus FabI in complex with NADP and 5-ethyl- 2-phenoxyphenol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ALL PDB ENTRY 4ALL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M K/NA-PHOSPHATE PH 6.5, 36% MPD
Crystal Properties Matthews coefficient Solvent content 2.95 58.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.23 α = 98.24 b = 95.14 β = 112.27 c = 95.34 γ = 97.27
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 49.33 92.1 0.07 6.41 2.07 206602 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 92.6 0.4 2 2.07
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ALL 1.9 40.93 196161 10428 92.07 0.15218 0.15003 0.1756 0.19274 0.2147 RANDOM 30.063
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.79 0.1 0.73 -1.61 -0.66 -0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.846 r_dihedral_angle_4_deg 19.35 r_dihedral_angle_3_deg 15.868 r_dihedral_angle_1_deg 6.445 r_scangle_it 5.959 r_scbond_it 3.961 r_mcangle_it 2.263 r_angle_refined_deg 1.767 r_mcbond_it 1.525 r_chiral_restr 0.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.846 r_dihedral_angle_4_deg 19.35 r_dihedral_angle_3_deg 15.868 r_dihedral_angle_1_deg 6.445 r_scangle_it 5.959 r_scbond_it 3.961 r_mcangle_it 2.263 r_angle_refined_deg 1.767 r_mcbond_it 1.525 r_chiral_restr 0.108 r_bond_refined_d 0.015 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15683 Nucleic Acid Atoms Solvent Atoms 1391 Heterogen Atoms 592
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing