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Crystal structure of S. aureus FabI in complex with NADP and 5-chloro- 2-phenoxyphenol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4ALK PDB ENTRY 4ALK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M K/NA-PHOSPHATE PH 6.5, 35% MPD
Crystal Properties Matthews coefficient Solvent content 2.92 57.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.24 α = 97.95 b = 94.756 β = 112.35 c = 94.803 γ = 97.36
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-06-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 49.11 94.4 0.08 5.91 1.85 135192 6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 93.2 0.35 1.95 1.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4ALK 2.2 49.11 128388 6804 94.45 0.16089 0.15782 0.21932 0.2497 RANDOM 47.725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.3 0.01 1.64 -2.06 -0.65 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.515 r_dihedral_angle_4_deg 19.181 r_dihedral_angle_3_deg 17.175 r_dihedral_angle_1_deg 7.124 r_scangle_it 5.683 r_scbond_it 3.939 r_mcangle_it 2.196 r_angle_refined_deg 1.788 r_mcbond_it 1.413 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.515 r_dihedral_angle_4_deg 19.181 r_dihedral_angle_3_deg 17.175 r_dihedral_angle_1_deg 7.124 r_scangle_it 5.683 r_scbond_it 3.939 r_mcangle_it 2.196 r_angle_refined_deg 1.788 r_mcbond_it 1.413 r_chiral_restr 0.095 r_gen_planes_refined 0.014 r_bond_refined_d 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15675 Nucleic Acid Atoms Solvent Atoms 1222 Heterogen Atoms 584
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing