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Pseudomonas fluorescens PhoX in complex with phosphate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZWU PDB ENTRY 3ZWU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.1 M TRIS HCL PH 8.0, 0.2 M LICL, REMARK 280 20% W/V PEG 6000. THE CRYSTALS WERE SOAKED WITH 100 UL PHOSPHATE BUFFERED SALINE FOR HALF AN HOUR
Crystal Properties Matthews coefficient Solvent content 2.32 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.099 α = 90 b = 71.035 β = 90 c = 228.501 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 PIXEL DECTRIS PILATUS 6M 2012-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 16.2 83.6 0.07 6.3 2.5 258332
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.25 1.31 74.3 0.4 2.2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ZWU 1.25 16.14 243880 12913 82.89 0.1343 0.13272 0.1325 0.16432 0.1641 RANDOM 10.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 -0.34 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.035 r_sphericity_free 22.541 r_dihedral_angle_4_deg 14.057 r_dihedral_angle_3_deg 11.491 r_sphericity_bonded 6.498 r_dihedral_angle_1_deg 6.384 r_rigid_bond_restr 2.371 r_angle_refined_deg 1.463 r_angle_other_deg 0.808 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.035 r_sphericity_free 22.541 r_dihedral_angle_4_deg 14.057 r_dihedral_angle_3_deg 11.491 r_sphericity_bonded 6.498 r_dihedral_angle_1_deg 6.384 r_rigid_bond_restr 2.371 r_angle_refined_deg 1.463 r_angle_other_deg 0.808 r_chiral_restr 0.088 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8938 Nucleic Acid Atoms Solvent Atoms 1408 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing