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Mutations in the neighbourhood of CotA-laccase trinuclear site: E498T mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W6L PDB ENTRY 1W6L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 8 % PEG 4K, 0.1 M SODIUM CITRATE PH5.5, 26 % ISOPROPANOL
Crystal Properties Matthews coefficient Solvent content 3.56 65.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.898 α = 90 b = 101.898 β = 90 c = 136.931 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2007-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 88.39 99.6 0.07 5.1 55879 2.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.7 0.35 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W6L 2 44.11 52997 2840 99.59 0.17863 0.17671 0.1771 0.21497 0.2155 RANDOM 25.649
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.233 r_dihedral_angle_4_deg 16.827 r_dihedral_angle_3_deg 12.804 r_dihedral_angle_1_deg 6.275 r_scangle_it 2.184 r_scbond_it 1.413 r_angle_refined_deg 1.143 r_mcangle_it 0.947 r_mcbond_it 0.552 r_nbtor_refined 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.233 r_dihedral_angle_4_deg 16.827 r_dihedral_angle_3_deg 12.804 r_dihedral_angle_1_deg 6.275 r_scangle_it 2.184 r_scbond_it 1.413 r_angle_refined_deg 1.143 r_mcangle_it 0.947 r_mcbond_it 0.552 r_nbtor_refined 0.308 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.143 r_xyhbond_nbd_refined 0.129 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4069 Nucleic Acid Atoms Solvent Atoms 469 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing