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Crystal structure of BpGH117_E303Q in complex with neoagarobiose
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.39 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.9 α = 90 b = 93.55 β = 90 c = 104.96 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 40 95 0.09 14.7 6.7 73189 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 73.2 0.26 5.5 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 69.84 69259 3669 94.57 0.15812 0.15544 0.1554 0.20854 0.2084 RANDOM 15.225
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.46 0.3 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.722 r_dihedral_angle_4_deg 18.999 r_dihedral_angle_3_deg 14.355 r_dihedral_angle_1_deg 8.412 r_scangle_it 5.86 r_scbond_it 4.429 r_mcangle_it 2.893 r_mcbond_it 2.265 r_angle_refined_deg 1.349 r_chiral_restr 0.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.722 r_dihedral_angle_4_deg 18.999 r_dihedral_angle_3_deg 14.355 r_dihedral_angle_1_deg 8.412 r_scangle_it 5.86 r_scbond_it 4.429 r_mcangle_it 2.893 r_mcbond_it 2.265 r_angle_refined_deg 1.349 r_chiral_restr 0.124 r_gen_planes_refined 0.024 r_bond_refined_d 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5907 Nucleic Acid Atoms Solvent Atoms 784 Heterogen Atoms 64
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing