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Native crystal structure of BpGH117
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 15-25% (W/V)POLYETHYLENE GLYCOL 3350, 100 MM AMMONIUM ACETATE (SIGMA), 100MM BIS-TRIS PH 5.5
Crystal Properties Matthews coefficient Solvent content 2.4 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.99 α = 90 b = 93 β = 90 c = 105.54 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD RH COATED FLAT MIRROR, TOROIDAL FOCUSING MIRROR M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 37.96 100 0.07 17 7.4 91258 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.79 100 0.37 5.1 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.7 105.54 86666 4550 99.68 0.17535 0.17372 0.1729 0.20653 0.2049 RANDOM 18.042
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.7 0.7
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.047 r_dihedral_angle_4_deg 17.696 r_dihedral_angle_3_deg 12.908 r_dihedral_angle_1_deg 8.275 r_scangle_it 5.032 r_scbond_it 3.622 r_mcangle_it 2.47 r_mcbond_it 1.742 r_angle_refined_deg 1.141 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.047 r_dihedral_angle_4_deg 17.696 r_dihedral_angle_3_deg 12.908 r_dihedral_angle_1_deg 8.275 r_scangle_it 5.032 r_scbond_it 3.622 r_mcangle_it 2.47 r_mcbond_it 1.742 r_angle_refined_deg 1.141 r_chiral_restr 0.105 r_gen_planes_refined 0.02 r_bond_refined_d 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5889 Nucleic Acid Atoms Solvent Atoms 673 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling