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The crystal structure of mouse protein-Z dependent protease inhibitor(mZPI)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3F1S PDB ENTRY 3F1S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 4.3 M NACL,0.1 M HEPES-NA, PH7.2
Crystal Properties Matthews coefficient Solvent content 4.06 69.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.53 α = 90 b = 83.53 β = 90 c = 181.26 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2012-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 72.34 98 0.27 4.9 5.3 23621 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 94.4 1.06 1.6 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3F1S 2.5 72.34 23621 1271 97.9 0.23089 0.22882 0.2314 0.26894 0.2594 RANDOM 57.618
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.3 0.65 1.3 -1.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.377 r_dihedral_angle_4_deg 17.603 r_dihedral_angle_3_deg 16.205 r_dihedral_angle_1_deg 6.493 r_scangle_it 1.352 r_angle_refined_deg 1.052 r_scbond_it 0.769 r_angle_other_deg 0.765 r_mcangle_it 0.64 r_mcbond_it 0.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.377 r_dihedral_angle_4_deg 17.603 r_dihedral_angle_3_deg 16.205 r_dihedral_angle_1_deg 6.493 r_scangle_it 1.352 r_angle_refined_deg 1.052 r_scbond_it 0.769 r_angle_other_deg 0.765 r_mcangle_it 0.64 r_mcbond_it 0.336 r_chiral_restr 0.061 r_mcbond_other 0.039 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3033 Nucleic Acid Atoms Solvent Atoms 11 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling CCP4 phasing