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Flo5A showing a heptanuclear gadolinium cluster on its surface after 9 min of soaking
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XJP PDB ENTRY 2XJP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 200 MM BISTRIS PROPANE PH 7.5 500 MM NACL 20% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.63 53.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.17 α = 90 b = 62.69 β = 90 c = 105.65 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 BENT CYLINDRICAL MIRROR 2010-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 42.31 99.7 0.04 21.6 3.3 29050 2 15.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.9 0.32 3.9 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 2XJP 1.8 40.58 28379 525 99.43 0.17722 0.17646 0.1729 0.2178 0.2146 RANDOM 14.028
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.4 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.76 r_dihedral_angle_4_deg 25.381 r_dihedral_angle_3_deg 13.214 r_dihedral_angle_1_deg 6.17 r_scangle_it 3.18 r_scbond_it 2.254 r_mcangle_it 1.426 r_angle_refined_deg 1.313 r_mcbond_it 0.895 r_chiral_restr 0.098
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.76 r_dihedral_angle_4_deg 25.381 r_dihedral_angle_3_deg 13.214 r_dihedral_angle_1_deg 6.17 r_scangle_it 3.18 r_scbond_it 2.254 r_mcangle_it 1.426 r_angle_refined_deg 1.313 r_mcbond_it 0.895 r_chiral_restr 0.098 r_bond_refined_d 0.009 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1938 Nucleic Acid Atoms Solvent Atoms 310 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing