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Flo5A cocrystallized with 3 mM GdAc3
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XJP PDB ENTRY 2XJP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 200 MM BISTRIS PROPANE, 500 MM NACL, 3 MM GDAC3, 20% PEG4000, pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.61 52.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.3 α = 90 b = 61.76 β = 90 c = 106.08 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate OSMIC MIRRORS 2009-02-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 19.37 96.3 0.04 13.4 2.6 43091 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 92.9 0.38 1.8 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XJP 1.7 19.29 32216 596 95.88 0.1847 0.18408 0.1839 0.21898 0.2183 RANDOM 18.758
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.24 2.26 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.855 r_dihedral_angle_3_deg 12.488 r_dihedral_angle_4_deg 8.383 r_dihedral_angle_1_deg 5.614 r_scangle_it 2.264 r_scbond_it 1.466 r_angle_refined_deg 1.458 r_mcangle_it 1.037 r_mcbond_it 0.576 r_chiral_restr 0.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.855 r_dihedral_angle_3_deg 12.488 r_dihedral_angle_4_deg 8.383 r_dihedral_angle_1_deg 5.614 r_scangle_it 2.264 r_scbond_it 1.466 r_angle_refined_deg 1.458 r_mcangle_it 1.037 r_mcbond_it 0.576 r_chiral_restr 0.087 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1936 Nucleic Acid Atoms Solvent Atoms 302 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing