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Flo5A showing a heptanuclear gadolinium cluster on its surface
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XJP PDB ENTRY 2XJP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 200 MM BISTRISPROPANE PH 7.5, 500 MM NACL, 20% PEG 4000
Crystal Properties Matthews coefficient Solvent content 2.68 54.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.3 α = 90 b = 64.25 β = 90 c = 104.7 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate OSMIC MIRRORS 2009-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 19.44 99.4 0.05 18.6 4.6 50469 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 98.5 0.35 4 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XJP 1.5 19.29 49565 903 99.39 0.13314 0.13239 0.1389 0.17469 0.1781 RANDOM 16.763
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.25 0.4 0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.114 r_dihedral_angle_4_deg 25.606 r_dihedral_angle_3_deg 13.312 r_dihedral_angle_1_deg 7.136 r_scangle_it 6.579 r_scbond_it 5.006 r_mcangle_it 3.686 r_mcbond_it 2.569 r_angle_refined_deg 1.681 r_rigid_bond_restr 1.528
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.114 r_dihedral_angle_4_deg 25.606 r_dihedral_angle_3_deg 13.312 r_dihedral_angle_1_deg 7.136 r_scangle_it 6.579 r_scbond_it 5.006 r_mcangle_it 3.686 r_mcbond_it 2.569 r_angle_refined_deg 1.681 r_rigid_bond_restr 1.528 r_chiral_restr 0.125 r_gen_planes_refined 0.015 r_bond_refined_d 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1942 Nucleic Acid Atoms Solvent Atoms 387 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing