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Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with fucosylated monosaccharides (Fuc1-2Gal, Fuc1- 3GlcNAc, Fuc1-4GlcNAc and Fuc1-6GlcNAc)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4AGI PDB ENTRY 4AGI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 200 MM CACL2, 25% PEG 4K AND 100 MM TRIS, PH 8.5
Crystal Properties Matthews coefficient Solvent content 2.17 43.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.73 α = 90 b = 88.38 β = 99.63 c = 78.58 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 36.41 87.6 0.12 7.1 2.1 27431 2 18.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 71.8 0.38 2.7 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4AGI 2.2 77.47 26054 1373 87.44 0.16699 0.16466 0.1614 0.21169 0.2052 RANDOM 12.996
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.51 1.53 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.915 r_dihedral_angle_3_deg 13.415 r_dihedral_angle_4_deg 13.32 r_dihedral_angle_1_deg 7.605 r_angle_refined_deg 1.535 r_angle_other_deg 0.9 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.915 r_dihedral_angle_3_deg 13.415 r_dihedral_angle_4_deg 13.32 r_dihedral_angle_1_deg 7.605 r_angle_refined_deg 1.535 r_angle_other_deg 0.9 r_chiral_restr 0.086 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4879 Nucleic Acid Atoms Solvent Atoms 443 Heterogen Atoms 203
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing