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Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with seleno fucoside.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 200 MM CACL2, 25% PEG 4K AND 100 MM TRIS, PH 8.5 METHYL-SE-FUCOSIDE (19 MM)
Crystal Properties Matthews coefficient Solvent content 2.14 43.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.691 α = 91.09 b = 79.847 β = 88.89 c = 84.389 γ = 103
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 43.77 91.8 0.04 19.4 3.9 150144 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.69 93.4 0.27 4.1 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.6 84.22 142614 7525 95.67 0.15363 0.15194 0.1697 0.18508 0.1991 RANDOM 10.695
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -0.54 0.34 -0.57 -0.42 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.658 r_dihedral_angle_3_deg 12.156 r_dihedral_angle_4_deg 11.579 r_dihedral_angle_1_deg 7.378 r_angle_refined_deg 1.689 r_angle_other_deg 0.962 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.658 r_dihedral_angle_3_deg 12.156 r_dihedral_angle_4_deg 11.579 r_dihedral_angle_1_deg 7.378 r_angle_refined_deg 1.689 r_angle_other_deg 0.962 r_chiral_restr 0.112 r_bond_refined_d 0.016 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9754 Nucleic Acid Atoms Solvent Atoms 1161 Heterogen Atoms 312
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling HKL2Map phasing