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Crystal structure of the reactive loop cleaved ZPI in I2 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7API PDB ENTRY 7API
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 1.8M NAK PHOSPHATE, PH5
Crystal Properties Matthews coefficient Solvent content 3.25 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.85 α = 90 b = 106.66 β = 112.58 c = 81.163 γ = 90
Symmetry Space Group I 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 44.39 84.3 0.08 6.9 87 31054 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.2 87 0.47 1.8 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 7API 2.09 66.52 29436 1573 84.01 0.21151 0.20953 0.2132 0.24882 0.2521 RANDOM 41.827
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.35 1.34 -0.49 0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.46 r_dihedral_angle_4_deg 22.375 r_dihedral_angle_3_deg 15.878 r_dihedral_angle_1_deg 6.919 r_scangle_it 3.971 r_scbond_it 2.406 r_mcangle_it 1.658 r_angle_refined_deg 1.541 r_mcbond_it 0.883 r_angle_other_deg 0.862
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.46 r_dihedral_angle_4_deg 22.375 r_dihedral_angle_3_deg 15.878 r_dihedral_angle_1_deg 6.919 r_scangle_it 3.971 r_scbond_it 2.406 r_mcangle_it 1.658 r_angle_refined_deg 1.541 r_mcbond_it 0.883 r_angle_other_deg 0.862 r_mcbond_other 0.185 r_chiral_restr 0.087 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3083 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALEPACK data scaling PHASER phasing