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High resolution structure of a PII mutant (I86N) protein in complex with ATP, MG and FLC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 pH 5.6
Crystal Properties Matthews coefficient Solvent content 1.81 31.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.087 α = 90 b = 62.087 β = 90 c = 51.116 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 37 99.6 0.09 12.2 7.2 49584 2.1 6.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.07 98.3 0.74 2.1 6.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.05 137 2.1 49582 99 0.13 0.12 0.1615 0.14 0.1793 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.02 0.05 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.427 r_dihedral_angle_4_deg 16.422 r_dihedral_angle_3_deg 14.71 r_dihedral_angle_1_deg 7.169 r_scangle_it 6.79 r_scbond_it 4.913 r_mcangle_it 3.238 r_angle_refined_deg 2.428 r_angle_other_deg 1.259 r_mcbond_other 0.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.427 r_dihedral_angle_4_deg 16.422 r_dihedral_angle_3_deg 14.71 r_dihedral_angle_1_deg 7.169 r_scangle_it 6.79 r_scbond_it 4.913 r_mcangle_it 3.238 r_angle_refined_deg 2.428 r_angle_other_deg 1.259 r_mcbond_other 0.833 r_chiral_restr 0.15 r_bond_refined_d 0.032 r_gen_planes_refined 0.014 r_gen_planes_other 0.005 r_mcbond_it 0.005 r_bond_other_d 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 843 Nucleic Acid Atoms Solvent Atoms 130 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling MOLREP phasing