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Crystal Structure of subtype-switched Epithelial Adhesin 1 to 2 A domain (Epa1to2A) from Candida glabrata in complex with glycerol
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other EPA1A WILD TYPE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 pH 6
Crystal Properties Matthews coefficient Solvent content 2.28 46.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.56 α = 90 b = 104.04 β = 90 c = 69.15 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC MIRRORS 2009-12-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR591
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.81 97.7 0.12 7.4 3.1 55079 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 99.7 0.52 3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT EPA1A WILD TYPE 2.05 19.6 16152 571 97.19 0.20441 0.20314 0.2099 0.23896 0.2505 RANDOM 17.25
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.93 0.33 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.939 r_dihedral_angle_4_deg 14.277 r_dihedral_angle_3_deg 12.661 r_dihedral_angle_1_deg 6.345 r_scangle_it 2.138 r_mcangle_it 1.899 r_scbond_it 1.338 r_angle_refined_deg 1.296 r_mcbond_it 1.24 r_angle_other_deg 1.036
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.939 r_dihedral_angle_4_deg 14.277 r_dihedral_angle_3_deg 12.661 r_dihedral_angle_1_deg 6.345 r_scangle_it 2.138 r_mcangle_it 1.899 r_scbond_it 1.338 r_angle_refined_deg 1.296 r_mcbond_it 1.24 r_angle_other_deg 1.036 r_mcbond_other 0.34 r_chiral_restr 0.144 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1798 Nucleic Acid Atoms Solvent Atoms 177 Heterogen Atoms 49
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling XSCALE data scaling REFMAC phasing