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Crystal Structure of Epithelial Adhesin 1 A domain (Epa1A) from Candida glabrata in complex with Galb1-3Glc
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XJP PDB ENTRY 2XJP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M MES PH 6.5, 0.2 M AMMONIUM SULFATE, 0.025 M LACTOSE
Crystal Properties Matthews coefficient Solvent content 2.31 46.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.64 α = 90 b = 104.33 β = 90 c = 69.79 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRRORS 2009-07-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 19.89 98.8 0.07 14.6 4 43249 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 98.7 0.66 2.6 4.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2XJP 1.5 19.89 41751 1498 98.46 0.15683 0.15579 0.172 0.18576 0.2034 RANDOM 18.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.37 0.44 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.833 r_dihedral_angle_3_deg 13.962 r_dihedral_angle_4_deg 10.267 r_dihedral_angle_1_deg 6.645 r_scangle_it 3.114 r_mcangle_it 2.467 r_scbond_it 2.127 r_mcbond_it 1.604 r_angle_refined_deg 1.601 r_angle_other_deg 0.956
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.833 r_dihedral_angle_3_deg 13.962 r_dihedral_angle_4_deg 10.267 r_dihedral_angle_1_deg 6.645 r_scangle_it 3.114 r_mcangle_it 2.467 r_scbond_it 2.127 r_mcbond_it 1.604 r_angle_refined_deg 1.601 r_angle_other_deg 0.956 r_mcbond_other 0.544 r_chiral_restr 0.099 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1809 Nucleic Acid Atoms Solvent Atoms 271 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling XSCALE data scaling PHASER phasing