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CRYSTAL STRUCTURE OF THE MOUSE COLONY-STIMULATING FACTOR 1 (MCSF-1) CYTOKINE IN COMPLEX WITH THE VIRAL RECEPTOR BARF1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2CH8 PDB ENTRIES 2CH8 AND 3UF5 experimental model PDB 3UF5 PDB ENTRIES 2CH8 AND 3UF5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8.0
Crystal Properties Matthews coefficient Solvent content 3.38 61.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 234.75 α = 90 b = 234.75 β = 90 c = 96.04 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2011-05-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.5 40 94.5 0.15 5.7 1.7 11082 2 138.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4.5 4.62 93.2 0.68 1.6 1.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 2CH8 AND 3UF5 4.5 117.375 1.96 11078 1112 94.46 0.2265 0.2226 0.2537 0.2622 0.2821 187.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -22.3592 -22.3592 44.7184
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.924 f_angle_d 0.713 f_chiral_restr 0.041 f_bond_d 0.003 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10591 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 167
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing