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3D Structure of DotU from Francisella novicida
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 0.1 M TRIS, PH 8.8, 20% PEG 3350.
Crystal Properties Matthews coefficient Solvent content 2.25 45.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.309 α = 90 b = 85.314 β = 102.38 c = 66.989 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU R-AXIS IV OSMIC BLUE 2010-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-002 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 65.99 98.3 0.12 10.8 13.2 15228 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 93.2 0.5 4.1 12.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT NONE 2.49 65.43 14199 754 98.21 0.22117 0.2181 0.2194 0.27867 0.2811 RANDOM 46.297
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.05 0.17 2.55 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.816 r_dihedral_angle_3_deg 20.133 r_dihedral_angle_4_deg 16.42 r_dihedral_angle_1_deg 6.894 r_scangle_it 3.509 r_scbond_it 2.183 r_mcangle_it 1.682 r_angle_refined_deg 1.649 r_mcbond_it 0.901 r_chiral_restr 0.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.816 r_dihedral_angle_3_deg 20.133 r_dihedral_angle_4_deg 16.42 r_dihedral_angle_1_deg 6.894 r_scangle_it 3.509 r_scbond_it 2.183 r_mcangle_it 1.682 r_angle_refined_deg 1.649 r_mcbond_it 0.901 r_chiral_restr 0.127 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2565 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling autoSHARP phasing