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Crystal structure of the mutant D75N I-CreI in complex with an altered target (The four central bases, 2NN region, are composed by TGCA from 5' to 3')
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XE0 PDB ENTRY 2XE0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 35% METOH, 0.1M SODIUM CACODYLATE PH 6.5,
Crystal Properties Matthews coefficient Solvent content 3.05 64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.17 α = 90 b = 71.43 β = 90 c = 173.51 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 71.43 98.3 0.09 3.7 3.5 21522 1.6 56.63
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 98.2 0.47 1.6 3.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 2XE0 2.5 55.144 1.33 21362 1990 97.35 0.2011 0.1963 0.194 0.2473 0.2417
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.6311 -10.69 21.3155
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 22.763 f_angle_d 1.215 f_chiral_restr 0.07 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2464 Nucleic Acid Atoms 978 Solvent Atoms 107 Heterogen Atoms 4
Software Software Software Name Purpose PHENIX refinement XDS data reduction SCALA data scaling PHASER phasing