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Crystal structure of ANCE in complex with bradykinin potentiating peptide b
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X8Y PDB ENTRY 2X8Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 M HEPES 7.5, 1.3 M SODIUM CITRATE
Crystal Properties Matthews coefficient Solvent content 4.3 71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.214 α = 90 b = 173.214 β = 90 c = 102.898 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-05-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 50 90.3 0.05 18.2 2.6 78895
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.06 85.3 0.23 3.5 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2X8Y 1.99 38.1 67576 3561 90.16 0.20443 0.20325 0.2046 0.22578 0.2269 RANDOM 37.556
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.488 r_dihedral_angle_4_deg 14.37 r_dihedral_angle_3_deg 12.621 r_dihedral_angle_1_deg 4.969 r_scangle_it 1.818 r_scbond_it 1.067 r_angle_refined_deg 1.027 r_mcangle_it 0.702 r_mcbond_it 0.359 r_chiral_restr 0.076
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.488 r_dihedral_angle_4_deg 14.37 r_dihedral_angle_3_deg 12.621 r_dihedral_angle_1_deg 4.969 r_scangle_it 1.818 r_scbond_it 1.067 r_angle_refined_deg 1.027 r_mcangle_it 0.702 r_mcbond_it 0.359 r_chiral_restr 0.076 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4923 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 101
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing