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Crystal Structure of Birch Pollen Allergen Bet v 1 isoform j in complex with 8-Anilinonaphthalene-1-sulfonate (ANS)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A80 PDB ENTRY 4A80
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 1.99 38.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.76 α = 90 b = 56 β = 93.4 c = 38.08 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2010-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 28.24 98.3 0.08 11.5 3.6 39178
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.23 1.3 88.8 0.15 5.3 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A80 1.23 38.01 37186 1971 98.18 0.13657 0.13471 0.1442 0.17094 0.1799 RANDOM 12.06
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.44 -0.06 0.3 -1.75
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.998 r_dihedral_angle_2_deg 37.023 r_dihedral_angle_4_deg 33.62 r_scangle_it 18.098 r_scbond_it 13.117 r_dihedral_angle_3_deg 12.931 r_sphericity_bonded 11.983 r_mcangle_it 10.353 r_mcbond_it 7.945 r_mcbond_other 7.479
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 45.998 r_dihedral_angle_2_deg 37.023 r_dihedral_angle_4_deg 33.62 r_scangle_it 18.098 r_scbond_it 13.117 r_dihedral_angle_3_deg 12.931 r_sphericity_bonded 11.983 r_mcangle_it 10.353 r_mcbond_it 7.945 r_mcbond_other 7.479 r_dihedral_angle_1_deg 5.58 r_rigid_bond_restr 3.599 r_angle_refined_deg 1.751 r_angle_other_deg 0.95 r_symmetry_vdw_refined 0.282 r_nbd_refined 0.249 r_xyhbond_nbd_refined 0.234 r_nbd_other 0.195 r_nbtor_refined 0.185 r_symmetry_vdw_other 0.174 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.103 r_nbtor_other 0.09 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1230 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing