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Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with kinetin.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A80 PDB ENTRY 4A80
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 1.98 38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.69 α = 90 b = 55.89 β = 93.24 c = 38.04 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2010-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 32.64 82.8 0.05 11.8 3 22328
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.48 85.8 0.22 3.9 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A80 1.4 37.98 21237 1072 82.66 0.12165 0.11867 0.1296 0.17973 0.1959 RANDOM 14.262
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.95 -0.11 -0.17 1.11
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 53.571 r_dihedral_angle_4_deg 37.809 r_dihedral_angle_2_deg 35.888 r_sphericity_bonded 15.258 r_dihedral_angle_3_deg 14.378 r_scangle_it 6.543 r_dihedral_angle_1_deg 5.781 r_rigid_bond_restr 4.98 r_scbond_it 4.334 r_mcangle_it 2.879
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 53.571 r_dihedral_angle_4_deg 37.809 r_dihedral_angle_2_deg 35.888 r_sphericity_bonded 15.258 r_dihedral_angle_3_deg 14.378 r_scangle_it 6.543 r_dihedral_angle_1_deg 5.781 r_rigid_bond_restr 4.98 r_scbond_it 4.334 r_mcangle_it 2.879 r_angle_refined_deg 2.006 r_mcbond_it 1.801 r_angle_other_deg 1.027 r_xyhbond_nbd_other 0.839 r_mcbond_other 0.532 r_xyhbond_nbd_refined 0.418 r_symmetry_vdw_refined 0.315 r_nbd_refined 0.283 r_nbd_other 0.208 r_nbtor_refined 0.198 r_symmetry_vdw_other 0.197 r_symmetry_hbond_refined 0.158 r_chiral_restr 0.13 r_nbtor_other 0.093 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1232 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing