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Crystal Structure of Major Birch Pollen Allergen Bet v 1 a F30V mutant in complex with deoxycholate.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A80 PDB ENTRY 4A80
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 1.97 37.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.56 α = 90 b = 55.98 β = 93.69 c = 37.97 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 32.49 97.3 0.11 4.9 3.1 21271
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 96 0.74 2.1 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A80 1.5 37.89 20173 1069 97.05 0.16907 0.16497 0.1725 0.24315 0.248 RANDOM 14.065
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 0.23 -0.09 -0.93
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.251 r_dihedral_angle_4_deg 35.442 r_dihedral_angle_2_deg 35.184 r_scangle_it 20.661 r_scbond_it 17.541 r_mcangle_it 13.545 r_dihedral_angle_3_deg 13.098 r_sphericity_bonded 11.815 r_mcbond_it 10.855 r_dihedral_angle_1_deg 5.806
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 40.251 r_dihedral_angle_4_deg 35.442 r_dihedral_angle_2_deg 35.184 r_scangle_it 20.661 r_scbond_it 17.541 r_mcangle_it 13.545 r_dihedral_angle_3_deg 13.098 r_sphericity_bonded 11.815 r_mcbond_it 10.855 r_dihedral_angle_1_deg 5.806 r_mcbond_other 5.691 r_rigid_bond_restr 3.479 r_angle_refined_deg 1.846 r_angle_other_deg 0.964 r_symmetry_vdw_refined 0.301 r_nbd_refined 0.249 r_nbd_other 0.194 r_xyhbond_nbd_refined 0.179 r_nbtor_refined 0.176 r_symmetry_vdw_other 0.16 r_symmetry_hbond_refined 0.116 r_chiral_restr 0.102 r_nbtor_other 0.088 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1229 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing