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Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in ternary complex with 8-Anilinonaphthalene-1-sulfonate (ANS) and deoxycholic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4A80 PDB ENTRY 4A80
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 1.97 37.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.6 α = 90 b = 55.82 β = 93.04 c = 37.85 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate MIRRORS 2011-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 37.8 88.3 0.05 13 2.6 7579
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.16 90.5 0.16 5.9 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4A80 2.05 37.8 7189 366 88.07 0.16525 0.16194 0.1684 0.23011 0.2384 RANDOM 20.571
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.06 1.04 -0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.31 r_dihedral_angle_4_deg 29.126 r_dihedral_angle_3_deg 14.817 r_dihedral_angle_1_deg 6.235 r_scangle_it 4.861 r_scbond_it 3.085 r_mcangle_it 1.997 r_angle_refined_deg 1.851 r_mcbond_it 1.135 r_angle_other_deg 0.927
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.31 r_dihedral_angle_4_deg 29.126 r_dihedral_angle_3_deg 14.817 r_dihedral_angle_1_deg 6.235 r_scangle_it 4.861 r_scbond_it 3.085 r_mcangle_it 1.997 r_angle_refined_deg 1.851 r_mcbond_it 1.135 r_angle_other_deg 0.927 r_symmetry_vdw_refined 0.317 r_symmetry_hbond_refined 0.246 r_nbd_refined 0.244 r_xyhbond_nbd_refined 0.198 r_nbd_other 0.196 r_nbtor_refined 0.182 r_symmetry_vdw_other 0.168 r_metal_ion_refined 0.102 r_chiral_restr 0.094 r_nbtor_other 0.094 r_xyhbond_nbd_other 0.054 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1226 Nucleic Acid Atoms Solvent Atoms 108 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing