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Crystal Structure of Major Birch Pollen Allergen Bet v 1 a in complex with 8-Anilinonaphthalene-1-sulfonate (ANS)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FM4 PDB ENTRY 1FM4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7
Crystal Properties Matthews coefficient Solvent content 1.97 37.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.69 α = 90 b = 55.58 β = 93.76 c = 37.96 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2010-08-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 37.88 90.5 0.04 11.13 3.3 8488
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.96 2.07 98.8 0.06 21.8 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1FM4 1.96 37.88 8487 412 90.46 0.14731 0.14437 0.1524 0.20521 0.2209 RANDOM 13.387
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 0.19 0.52 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.621 r_sphericity_free 35.06 r_dihedral_angle_4_deg 27.397 r_dihedral_angle_3_deg 12.292 r_scangle_it 12.099 r_scbond_it 9.945 r_mcangle_it 7.405 r_sphericity_bonded 5.963 r_dihedral_angle_1_deg 5.723 r_mcbond_it 5.488
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.621 r_sphericity_free 35.06 r_dihedral_angle_4_deg 27.397 r_dihedral_angle_3_deg 12.292 r_scangle_it 12.099 r_scbond_it 9.945 r_mcangle_it 7.405 r_sphericity_bonded 5.963 r_dihedral_angle_1_deg 5.723 r_mcbond_it 5.488 r_mcbond_other 2.303 r_rigid_bond_restr 1.183 r_angle_refined_deg 1.102 r_angle_other_deg 0.882 r_nbd_refined 0.213 r_nbd_other 0.183 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.171 r_xyhbond_nbd_other 0.095 r_nbtor_other 0.084 r_chiral_restr 0.066 r_bond_other_d 0.01 r_bond_refined_d 0.007 r_gen_planes_refined 0.003 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1232 Nucleic Acid Atoms Solvent Atoms 115 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing