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A115V variant of dCTP deaminase-dUTPase from Mycobacterium tuberculosis in complex with dTTP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.05 40
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.59 α = 90 b = 179.51 β = 96.28 c = 99.81 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD FOCUSSING MIRRORS 2010-03-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 99 98.7 0.18 7.01 3.74 43288
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.9 49.42 41123 2165 100 0.25478 0.25297 0.2464 0.28985 0.2805 RANDOM 45.666
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.05 0.3 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.887 r_dihedral_angle_4_deg 17.318 r_dihedral_angle_3_deg 16.347 r_dihedral_angle_1_deg 6.45 r_scangle_it 3.721 r_scbond_it 2.006 r_angle_refined_deg 1.613 r_mcangle_it 1.548 r_mcbond_it 0.779 r_chiral_restr 0.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.887 r_dihedral_angle_4_deg 17.318 r_dihedral_angle_3_deg 16.347 r_dihedral_angle_1_deg 6.45 r_scangle_it 3.721 r_scbond_it 2.006 r_angle_refined_deg 1.613 r_mcangle_it 1.548 r_mcbond_it 0.779 r_chiral_restr 0.095 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17538 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 362
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling