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Mutations in the neighbourhood of CotA-laccase trinuclear site: D116N mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W6L PDB ENTRY 1W6L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 8% PEG 6000 WITH 25% OF 2-METHYL-2,4-PENTANEDIOL (MPD) IN 0.1M HEPES BUFFER AT PH 7.5
Crystal Properties Matthews coefficient Solvent content 3.48 64.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.548 α = 90 b = 101.548 β = 90 c = 136.717 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER PT135 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 87.94 99.8 0.06 12.4 4.5 55571 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 100 0.36 2.7 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W6L 2 87.94 52706 2819 99.81 0.1705 0.16891 0.1695 0.20013 0.2015 RANDOM 19.964
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.04 0.07 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.052 r_dihedral_angle_4_deg 20.076 r_dihedral_angle_3_deg 13.196 r_dihedral_angle_1_deg 6.759 r_scangle_it 3.859 r_scbond_it 2.357 r_mcangle_it 1.466 r_angle_refined_deg 1.453 r_mcbond_it 0.806 r_nbtor_refined 0.316
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.052 r_dihedral_angle_4_deg 20.076 r_dihedral_angle_3_deg 13.196 r_dihedral_angle_1_deg 6.759 r_scangle_it 3.859 r_scbond_it 2.357 r_mcangle_it 1.466 r_angle_refined_deg 1.453 r_mcbond_it 0.806 r_nbtor_refined 0.316 r_nbd_refined 0.199 r_symmetry_vdw_refined 0.176 r_symmetry_hbond_refined 0.171 r_xyhbond_nbd_refined 0.135 r_chiral_restr 0.105 r_metal_ion_refined 0.057 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4044 Nucleic Acid Atoms Solvent Atoms 443 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SADABS data scaling MOLREP phasing