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Mutations in the neighbourhood of CotA-laccase trinuclear site: D116A mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W6L PDB ENTRY 1W6L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.6 35% ETHYLENE GLYCOL, pH 7.6
Crystal Properties Matthews coefficient Solvent content 3.49 64.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.683 α = 90 b = 101.683 β = 90 c = 136.611 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER PT135 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 24.68 100 0.05 17.5 5.3 60037 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2 99.9 0.29 3.4 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1W6L 1.95 19.99 56785 3018 99.7 0.17554 0.17408 0.1753 0.20306 0.2033 RANDOM 20.82
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_nbtor_refined 313 r_dihedral_angle_2_deg 33.657 r_dihedral_angle_4_deg 20.384 r_dihedral_angle_3_deg 13.161 r_dihedral_angle_1_deg 6.752 r_scangle_it 3.691 r_scbond_it 2.261 r_mcangle_it 1.473 r_angle_refined_deg 1.428 r_mcbond_it 0.811
RMS Deviations Key Refinement Restraint Deviation r_nbtor_refined 313 r_dihedral_angle_2_deg 33.657 r_dihedral_angle_4_deg 20.384 r_dihedral_angle_3_deg 13.161 r_dihedral_angle_1_deg 6.752 r_scangle_it 3.691 r_scbond_it 2.261 r_mcangle_it 1.473 r_angle_refined_deg 1.428 r_mcbond_it 0.811 r_symmetry_vdw_refined 0.256 r_nbd_refined 0.198 r_symmetry_hbond_refined 0.16 r_xyhbond_nbd_refined 0.155 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4035 Nucleic Acid Atoms Solvent Atoms 443 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SADABS data scaling MOLREP phasing