☰ Navigation Tabs
CpGH89CBM32-5, from Clostridium perfringens, in complex with GalNAc- beta-1,3-galactose
Crystallization Crystal Properties Matthews coefficient Solvent content 2.01 38.74
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.803 α = 90 b = 58.631 β = 90 c = 70.658 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU-MSC R-AXIS IV++ M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 20 97.9 0.06 10.7 4.4 14448 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.75 45.13 13707 739 97.91 0.20089 0.19855 0.24571 0.2375 RANDOM 26.391
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.29 -0.17 -1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.631 r_dihedral_angle_3_deg 14.404 r_dihedral_angle_4_deg 11.336 r_dihedral_angle_1_deg 10.254 r_scangle_it 3.577 r_scbond_it 2.274 r_angle_refined_deg 1.716 r_mcangle_it 1.709 r_mcbond_it 0.97 r_symmetry_metal_ion_refined 0.453
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.631 r_dihedral_angle_3_deg 14.404 r_dihedral_angle_4_deg 11.336 r_dihedral_angle_1_deg 10.254 r_scangle_it 3.577 r_scbond_it 2.274 r_angle_refined_deg 1.716 r_mcangle_it 1.709 r_mcbond_it 0.97 r_symmetry_metal_ion_refined 0.453 r_metal_ion_refined 0.411 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.266 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.137 r_symmetry_hbond_refined 0.13 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1063 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling