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CpGH89CBM32-5, from Clostridium perfringens, in complex with the Tn Antigen
Crystallization Crystal Properties Matthews coefficient Solvent content 1.82 32.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.8 α = 90 b = 59.26 β = 90 c = 67.43 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU-MSC R-AXIS IV++ M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 97.5 0.06 12 4.3 14287 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 1.7 44.5 13562 720 97.27 0.18937 0.18758 0.182 0.22249 0.2163 RANDOM 19.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 -0.49 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.587 r_dihedral_angle_1_deg 15.195 r_dihedral_angle_3_deg 12.221 r_dihedral_angle_4_deg 9.21 r_scangle_it 3.481 r_scbond_it 2.179 r_angle_refined_deg 1.801 r_mcangle_it 1.392 r_mcbond_it 0.8 r_symmetry_metal_ion_refined 0.409
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.587 r_dihedral_angle_1_deg 15.195 r_dihedral_angle_3_deg 12.221 r_dihedral_angle_4_deg 9.21 r_scangle_it 3.481 r_scbond_it 2.179 r_angle_refined_deg 1.801 r_mcangle_it 1.392 r_mcbond_it 0.8 r_symmetry_metal_ion_refined 0.409 r_symmetry_vdw_refined 0.314 r_nbtor_refined 0.307 r_nbd_refined 0.213 r_metal_ion_refined 0.198 r_xyhbond_nbd_refined 0.17 r_symmetry_hbond_refined 0.161 r_chiral_restr 0.114 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1058 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 38
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling