☰ Navigation Tabs
Crystal structure of Archaemetzincin (AmzA) from Archaeoglobus fulgidus at 2.16 A resolution complexed with citrate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZVS PDB ENTRY 3ZVS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4 0.9 M AMMONIUM SULFATE, 0.1 M CITRIC ACID PH 4.0
Crystal Properties Matthews coefficient Solvent content 5.13 76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.926 α = 90 b = 111.926 β = 90 c = 102.094 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-07-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 49.07 99.8 0.1 17.12 12.9 20756 2 41.53
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.29 98.7 0.88 2.72 13.1
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 3ZVS 2.16 49.074 1.99 20753 1037 99.77 0.1954 0.1941 0.1915 0.2202 0.2165 39.41
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.8401 3.8401 -7.6802
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.424 f_angle_d 1.067 f_chiral_restr 0.066 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1229 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 15
Software Software Software Name Purpose PHENIX refinement XDS data reduction XDS data scaling PHASER phasing